The way of the digital dodo

February 20, 2009 Alvin Powell The way of the digital dodo

Enlarge

An early version of the scanned dodo rendered by project research technician Abby Drake and students in Leon Claessens' lab.

(PhysOrg.com) -- The laser light glowed brilliant red, forming a moving line as it bounced information from the dodo’s bones back into the high-tech scanner sitting on a tripod on the Museum of Comparative Zoology’s (MCZ) fifth floor.

Again and again, the red line traced the contours of the skeletal bird, one of just a handful of complete skeletons of one of the world’s most famous cases of human-caused extinction.

The flightless bird, about the size of a large turkey, was native to the Indian Ocean island of Mauritius. It became extinct in the mid- to late-1600s from a combination of human hunting, habitat destruction, and predation by introduced animals, including rats, cats, pigs, and dogs.

The laser’s tracings were creating a 3-D digital model of the skeleton, compiled as part of a joint effort between the MCZ’s ornithological collection, overseen by Professor of Organismic and Evolutionary Biology Scott Edwards, and Holy Cross College biologist Leon Claessens, an assistant professor whose doctoral work at Harvard and familiarity with the MCZ’s collections led to the collaboration. Claessens received his doctorate in 2006.

The National Science Foundation-funded, three-year effort aims to create 3-D digital models of each species represented in Harvard’s collection of 12,000 bird skeletons. It will make those digital models available on the Internet for researchers around the world. The collection’s digitization will not only vastly expand access to the collections for researchers who can’t afford to travel to Cambridge, it will also make analysis of the specimens far more rapid, using powerful engineering software that creates thousands of data points on each bone that can be manipulated, measured, and used in calculations.

“This project will be useful for people studying the basic morphology of birds,” Edwards said. “In this era of genomics, the size and shape of bones is still very important.”

Claessens, who has been scanning with a group of his students since the "Aves 3D" project got under way in August, said much of the effort is aimed at disarticulated bones of specimens, so that the scanner can image the entire bone, including the ends and surfaces that might not be accessible in an assembled specimen. Researchers interested in the shape and size of a particular bone across different species will be able to call up those bones digitally, rather than traveling to individual museums with calipers, pencil, pad, and camera, as would be required today. Those interested in other aspects of anatomy can manipulate the bones digitally, even reassembling the bird if needed.

“Once you have the digital model, you can take many, many measurements from fixed points,” Claessens said.

For specimens like the dodo, however, which Edwards said was one of the jewels of the collection, scanning the complete skeleton is the only option.

Claessens said the dodo skeleton, which was assembled of collected bones rather than those from a single individual, is one of just a handful — perhaps 10 — known around the world. That rarity makes it an important addition to the digital database. Having a digital model of rare skeletons will provide a backup should the original deteriorate or be damaged.

Having a scan of a complete dodo skeleton may also serve to widen the base of people interested in the online database, which is still under construction. While the digital database would be of obvious interest to ornithological researchers, Edwards and Claessens agreed that they would like it to also be of broader use. Digitization may provide new ways for students at Harvard and other universities to interact with the collection, while the presence of such rare specimens as the dodo may draw in the broader public, such as high school teachers and high school students interested in a particular aspect of avian anatomy for a science project.

The MCZ skeleton collection is not the largest around, Claessens said, but it is significant for its quality, holding several rare specimens like the dodo.

“The Harvard skeletal collection is a respectable one with a few gems, a few real rarities,” Claessens said. “These are amazing specimens.”

Provided by Harvard University


   
Rate this story - 4 /5 (3 votes)

Rank Filter

Move the slider to adjust rank threshold, so that you can hide some of the comments.


Display comments: newest first

  • Damon_Hastings - Feb 22, 2009
    • Rank: not rated yet
    Wow, I never knew that humans were responsible for the dodo's extinction. Makes it a bit more poignant, then, that we've made "dodo" synonymous with "stupid". Maybe we had to make them stupid to convince ourselves that they "had it coming", in some sort of Darwinian sense, and thus we need not feel any remorse over wiping them out.

February 20, 2009 all stories

Comments: 1

4 /5 (3 votes)

  • hide
  • Related Stories

  • Cold case techniques bring mummy's face to life
    created Jun 22, 2009 | popularity not rated yet | comments 0
  • Famous fossil Lucy scanned at the University of Texas at Austin
    created Feb 06, 2009 | popularity not rated yet | comments 0
  • Researchers describe how digits grow
    created Mar 11, 2008 | popularity not rated yet | comments 0
  • New training method for hip surgery
    created Feb 07, 2008 | popularity not rated yet | comments 0
  • Firefly genes allow testing of new therapy against lymphoma
    created Dec 19, 2007 | popularity not rated yet | comments 0



  • hide
  • Relevant PhysicsForums posts

  • Sleeping habits and the risk of cancer
    created Feb 08, 2010
  • Pressure in chambers of the heart
    created Feb 07, 2010
  • Primordial soup canned?
    created Feb 07, 2010
  • Where on the r/K selection theory scale do social insects like ants and bees fall?
    created Feb 06, 2010
  • Testosterone levels and Fighting
    created Feb 05, 2010
  • Evolution Simulator
    created Feb 04, 2010
  • More from Physics Forums - Biology

Other News

Study challenges bird-from-dinosaur theory of evolution - was it the other way around?

Study challenges bird-from-dinosaur theory of evolution - was it the other way around?

Other Sciences / Archaeology & Fossils

created 8 hours ago | popularity 4.3 / 5 (7) | comments 4 | with audio podcast

(PhysOrg.com) -- A new study just published in the Proceedings of the National Academy of Sciences provides yet more evidence that birds did not descend from ground-dwelling theropod dinosaurs, experts say, a ...


The Glass Cliff: Female representation in politics and business

Other Sciences / Social Sciences

created 2 hours ago | popularity not rated yet | comments 0

Leadership positions in business have proven to be precarious for women. Female business leaders are more likely to be appointed to powerful leadership positions when an organization is in crisis or high-risk circumstances. ...


'Counterfactual' thinkers are more motivated and analytical, study suggests

Other Sciences / Social Sciences

created 11 hours ago | popularity 4.5 / 5 (4) | comments 4 | with audio podcast

(PhysOrg.com) -- "If only I had..." Almost everyone has said those four words at some time. Rather than intensifying regret, '"what if" reflection about pivotal moments in the past helps people to weave a coherent life story, ...


Office romance? Not a problem most of time: study

Office romance? Not a problem most of time: study

Other Sciences / Social Sciences

created 9 hours ago | popularity not rated yet | comments 1

(PhysOrg.com) -- Pam and Jim on The Office. Meredith and McDreamy on Grey's Anatomy. Television shows depict many workplace romances, but in the real world how do co-workers view love on the job? According ...


Women on board: Does forced diversity hurt firm performance?

Other Sciences / Social Sciences

created 9 hours ago | popularity 1 / 5 (1) | comments 1

(PhysOrg.com) -- New SEC rules will require public firms to disclose what role, if any, diversity plays in appointing members to their corporate boards, but University of Michigan researchers say any forced restructuring ...